Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_00366Hypothetical protein. (688 aa)    
Predicted Functional Partners:
C807_02342
Flagellar operon protein.
 
     0.738
fliW
Hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
 
     0.718
C807_00367
Hypothetical protein.
       0.689
C807_03631
Hypothetical protein.
  
     0.629
C807_01378
Hypothetical protein.
 
     0.622
C807_00670
Flagellar motor switch protein FliM.
 
     0.613
C807_00365
Mannose-6-phosphate isomerase, class I.
       0.566
C807_00681
Hypothetical protein.
 
    0.544
C807_00802
Cell division protein FtsA.
 
     0.537
C807_00658
Hypothetical protein.
 
     0.532
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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