Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_00540Hypothetical protein; Belongs to the 'phage' integrase family. (403 aa)    
Predicted Functional Partners:
C807_00539
Hypothetical protein.
    
0.844
C807_00538
Hypothetical protein; Belongs to the 'phage' integrase family.
 
    
0.840
C807_03884
Hypothetical protein.
  
     0.772
C807_02744
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
  0.758
C807_01490
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.733
C807_02389
Hypothetical protein.
  
     0.733
C807_02928
Hypothetical protein.
  
     0.733
C807_00008
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.718
C807_00064
Hypothetical protein.
  
     0.718
C807_01161
Hypothetical protein.
  
     0.718
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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