Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_00627SpoIID/LytB domain-containing protein. (800 aa)    
Predicted Functional Partners:
C807_03282
Hypothetical protein.
  
    0.695
C807_03123
SpoIID/LytB domain-containing protein.
  
     0.686
C807_02734
Spore cortex biosynthesis protein YabQ.
 
  
 0.656
C807_00628
YihY family inner membrane protein; Belongs to the UPF0761 family.
       0.633
C807_01634
Stage II sporulation protein P.
  
  
 0.607
C807_01741
Hypothetical protein.
 
 
 0.535
C807_00012
Hypothetical protein.
   
    0.534
C807_00122
Hypothetical protein.
   
    0.534
C807_01107
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
   
  
 0.534
C807_02692
Hypothetical protein.
   
    0.534
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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