Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_00727Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain; Belongs to the ABC transporter superfamily. (337 aa)    
Predicted Functional Partners:
C807_00725
Oligopeptide transport system permease.
 
 0.999
C807_00726
Oligopeptide transport system permease.
 0.999
C807_00728
Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain; Belongs to the ABC transporter superfamily.
 
 
0.997
C807_00729
Peptide/nickel transport system substrate-binding protein.
 
 
 0.993
C807_01408
Hypothetical protein.
  
 
 0.870
C807_02494
Hypothetical protein.
  
 
 0.870
C807_01908
Hypothetical protein.
   
 
  0.771
C807_02108
Hypothetical protein.
   
 
  0.771
C807_01030
Branched-chain amino acid transport system ATP-binding protein.
    
 0.685
C807_02099
YaeC family lipoprotein; Belongs to the nlpA lipoprotein family.
   
 
 0.670
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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