Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_00870Stage IV sporulation protein B. (439 aa)    
Predicted Functional Partners:
C807_00871
Sporulation transcription factor Spo0A.
   
 0.844
C807_02327
Hypothetical protein.
   
 0.837
C807_00850
Stage III sporulation protein AA.
 
   
 0.805
C807_00853
Stage III sporulation protein AD.
 
     0.797
C807_00856
Stage III sporulation protein AG.
 
     0.794
C807_01291
Hypothetical protein.
  
  
 0.791
C807_03086
Sporulation transcriptional regulator SpoIIID.
  
  
 0.783
C807_00218
Hypothetical protein.
  
    0.779
C807_01934
Stage V sporulation protein AC.
  
    0.779
C807_01928
Stage V sporulation protein AD.
  
    0.778
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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