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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C807_00999Radical SAM-linked protein. (237 aa)    
Predicted Functional Partners:
C807_00998
Hypothetical protein.
    0.996
C807_01000
rne/Rng family ribonuclease.
 
     0.864
C807_01001
Hypothetical protein.
       0.783
hisI
phosphoribosyl-ATP diphosphatase; In the C-terminal section; belongs to the PRA-PH family.
       0.675
C807_01114
Hypothetical protein.
  
     0.652
C807_00997
Hypothetical protein.
       0.610
C807_00996
Delta-lactam-biosynthetic de-N-acetylase.
       0.580
murC
UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
  0.552
hisB
Hypothetical protein.
       0.535
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
    
  0.468
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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