Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_01011Hypothetical protein. (377 aa)    
Predicted Functional Partners:
C807_01010
Hypothetical protein.
  
 
 0.796
secF
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
     
  0.766
C807_01013
Hypothetical protein.
    
  0.751
C807_02224
Hypothetical protein.
 
 
 0.724
C807_02225
Hypothetical protein.
 
  
 0.718
C807_02241
Hypothetical protein.
  
 
 0.674
C807_02171
WecB/TagA/CpsF family glycosyltransferase; Belongs to the glycosyltransferase 26 family.
  
 0.670
C807_02383
Hypothetical protein.
  
 0.670
C807_01015
Hypothetical protein.
  
 
 0.658
C807_01012
Histidinol-phosphate transaminase.
       0.637
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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