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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C807_01372Hypothetical protein. (584 aa)    
Predicted Functional Partners:
C807_01371
ATP-binding cassette, subfamily B, bacterial.
 
  
 
0.895
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
  
    0.750
C807_03730
Polar amino acid transport system ATP-binding protein.
 
     
0.672
C807_00337
Hypothetical protein.
   
 0.589
C807_00556
ATP-binding cassette, subfamily B, bacterial.
  
  
 
0.583
C807_03766
Hypothetical protein.
  
  
 
0.577
C807_00821
ATP-binding cassette, subfamily B, bacterial.
  
  
 
0.555
C807_00916
Hypothetical protein.
  
  
 
0.555
C807_01673
ATP-binding cassette, subfamily B, bacterial.
  
  
 
0.548
C807_00917
Hypothetical protein.
  
  
 
0.541
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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