Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_01505Hypothetical protein. (140 aa)    
Predicted Functional Partners:
C807_01506
Hypothetical protein.
 
     0.737
C807_00719
Hypothetical protein.
  
     0.672
C807_03065
Hypothetical protein.
  
     0.662
C807_00544
Hypothetical protein.
 
  
 0.565
C807_03614
Hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type.
     
 0.468
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
  0.451
C807_03615
Hydrolyase, tartrate beta subunit/fumarate domain-containing protein, Fe-S type.
     
  0.451
C807_01504
Hypothetical protein.
       0.434
C807_01503
Hypothetical protein.
       0.421
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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