Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_01507Hypothetical protein. (224 aa)    
Predicted Functional Partners:
C807_01508
Hypothetical protein.
 
    0.946
C807_00353
Hypothetical protein.
 
    0.887
C807_00906
Hypothetical protein.
 
    0.887
C807_00355
Hypothetical protein.
 
     0.786
C807_01509
Hypothetical protein.
 
     0.673
C807_01675
Calcium-translocating P-type ATPase, PMCA-type.
  
 
 0.619
C807_00676
Flagellar biosynthetic protein FliR.
    
   0.545
C807_01562
Hypothetical protein.
  
  
 0.543
C807_01595
Hypothetical protein.
  
  
 0.543
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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