C807_01624 protein (Lachnospiraceae bacterium 284)

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Score

C807_01624

RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. (205 aa)

Predicted Functional Partners:

C807_01626

0.814

mrnC

0.814

C807_01625

0.731

C807_00799

0.726

rpoC

0.661

rpoB

0.656

cysS

0.654

codY

0.639

rpoZ

0.592

rpoA

0.592

Your Current Organism:

Lachnospiraceae bacterium 284

NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C807_00799	C807_01624	C807_00799	C807_01624	Hypothetical protein.	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	0.726
C807_01624	C807_00799	C807_01624	C807_00799	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	Hypothetical protein.	0.726
C807_01624	C807_01625	C807_01624	C807_01625	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	Hypothetical protein.	0.731
C807_01624	C807_01626	C807_01624	C807_01626	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.814
C807_01624	codY	C807_01624	C807_00652	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	GTP-sensing transcriptional pleiotropic repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.	0.639
C807_01624	cysS	C807_01624	C807_01628	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.654
C807_01624	mrnC	C807_01624	C807_01627	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	Hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.	0.814
C807_01624	rpoA	C807_01624	C807_03828	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.592
C807_01624	rpoB	C807_01624	C807_03918	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.656
C807_01624	rpoC	C807_01624	C807_03917	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.661
C807_01624	rpoZ	C807_01624	C807_00884	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.592
C807_01625	C807_01624	C807_01625	C807_01624	Hypothetical protein.	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	0.731
C807_01625	C807_01626	C807_01625	C807_01626	Hypothetical protein.	RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.711
C807_01625	cysS	C807_01625	C807_01628	Hypothetical protein.	cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.452
C807_01625	mrnC	C807_01625	C807_01627	Hypothetical protein.	Hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.	0.455
C807_01626	C807_01624	C807_01626	C807_01624	RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	0.814
C807_01626	C807_01625	C807_01626	C807_01625	RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Hypothetical protein.	0.711
C807_01626	cysS	C807_01626	C807_01628	RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.920
C807_01626	mrnC	C807_01626	C807_01627	RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.	0.958
C807_01626	rpoC	C807_01626	C807_03917	RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.481