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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrBAspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. (304 aa)    
Predicted Functional Partners:
C807_01817
Aspartate carbamoyltransferase, regulatory subunit.
 
 0.999
pyrC
Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
 
 0.999
carA
Carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.
 
 0.998
C807_02910
Carbamoyl-phosphate synthase, small subunit.
 
 0.996
carB
Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
 
 0.995
C807_03869
Carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.
 
 
 0.994
C807_02908
Hypothetical protein.
 
 0.992
C807_02907
Carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.
 
 0.991
pyrF
Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
 
  
 0.985
C807_02291
Hypothetical protein.
  
 
 0.978
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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