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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C807_01849Hypothetical protein. (425 aa)    
Predicted Functional Partners:
C807_01848
Hypothetical protein.
       0.791
C807_00341
Hypothetical protein.
   
    0.673
C807_01846
Hypothetical protein.
       0.598
C807_01847
Hypothetical protein.
       0.598
C807_01850
YbgI/family dinuclear metal center protein.
       0.463
C807_01851
Hypothetical protein.
       0.428
sigA
RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.428
C807_01086
Hypothetical protein.
  
     0.419
C807_02850
Hypothetical protein.
  
     0.404
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.