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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C807_01941Hypothetical protein. (471 aa)    
Predicted Functional Partners:
C807_01942
Hypothetical protein.
 
     0.946
valS
valine-tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.840
C807_01943
FolC protein; Belongs to the folylpolyglutamate synthase family.
       0.836
C807_03199
Hypothetical protein.
 
 
 
 0.793
C807_01649
Hypothetical protein.
 
     0.790
C807_02340
Hypothetical protein.
 
     0.776
C807_03185
Hypothetical protein.
  
     0.773
C807_01940
Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
       0.772
C807_01648
Hypothetical protein.
 
     0.771
C807_01374
Hypothetical protein.
  
     0.769
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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