Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_02003Hypothetical protein. (249 aa)    
Predicted Functional Partners:
C807_02004
Hypothetical protein.
 
   
 0.959
C807_02005
Hypothetical protein.
 
 
 0.945
C807_02007
Hypothetical protein.
 
     0.830
C807_02006
Hypothetical protein.
 
   
 0.712
C807_02504
Hypothetical protein.
  
     0.560
C807_02636
Antibiotic transport system permease.
 
  
  0.537
C807_02031
Hypothetical protein.
 
  
  0.535
C807_01948
Hypothetical protein.
 
 
 0.529
C807_01860
Hypothetical protein.
  
     0.514
C807_02002
Hypothetical protein.
       0.498
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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