Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_02012Diguanylate cyclase (GGDEF) domain-containing protein. (308 aa)    
Predicted Functional Partners:
C807_00190
Hypothetical protein.
 0.998
C807_01418
Hypothetical protein.
 0.998
C807_00945
Hypothetical protein.
 0.991
C807_03740
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.991
C807_00944
Hypothetical protein.
 0.987
C807_01593
Hypothetical protein.
 0.987
C807_03871
Hypothetical protein.
 0.987
C807_02440
PAS domain S-box protein.
 0.980
C807_03170
Hypothetical protein.
 0.979
C807_01547
Hypothetical protein.
 
 0.974
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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