Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_02045Hypothetical protein. (292 aa)    
Predicted Functional Partners:
C807_03597
Flagellar protein FliS.
 
 
   0.807
C807_02044
Hypothetical protein.
       0.785
C807_03631
Hypothetical protein.
 
     0.779
C807_00681
Hypothetical protein.
 
     0.772
C807_00661
Hypothetical protein.
  
     0.770
C807_02879
Flagellar biosynthesis anti-sigma factor FlgM.
  
     0.770
C807_02878
Hypothetical protein.
  
     0.769
C807_03612
Hypothetical protein.
  
     0.769
C807_03677
Hypothetical protein.
  
     0.769
C807_00660
Flagellar export protein FliJ.
  
     0.768
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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