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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C807_02060Hypothetical protein. (328 aa)    
Predicted Functional Partners:
C807_00207
PTS system, glucose-like IIB component.
    
 0.789
C807_00370
PTS system, maltose and glucose-specific subfamily, IIC component.
    
 0.789
C807_01432
PTS system, glucose subfamily, IIA component.
    
 0.789
C807_01641
PTS system, beta-glucoside-specific IIABC component.
    
 0.789
C807_02574
PTS system, glucose subfamily, IIA component.
    
 0.789
C807_02180
Hypothetical protein.
  
     0.774
C807_03569
Hypothetical protein.
  
     0.774
C807_03630
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.694
C807_03310
Hypothetical protein.
  
     0.679
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
 0.671
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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