Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_02063Hypothetical protein. (381 aa)    
Predicted Functional Partners:
C807_02064
Type I restriction-modification system, M subunit.
 
 0.996
C807_01750
Type I restriction-modification system, M subunit.
 
 0.987
C807_03341
Type I restriction-modification system, M subunit.
 
 0.979
C807_02165
Hypothetical protein.
 
 0.978
C807_02061
HsdR family type I site-specific deoxyribonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.976
C807_01171
Hypothetical protein.
  
 0.889
C807_02000
Hypothetical protein.
  
 0.887
C807_02166
Hypothetical protein.
  
 0.887
C807_03323
Hypothetical protein.
  
 0.887
atpF
ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
   
 0.825
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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