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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C807_02096Rrf2 family protein. (146 aa)    
Predicted Functional Partners:
C807_00319
Hypothetical protein.
  
 
 0.847
iscS
Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
  
 
 0.847
C807_02408
Hypothetical protein.
  
 
 0.847
C807_02744
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.760
C807_00898
FeS cluster assembly scaffold protein NifU.
 
  
 0.738
C807_00657
Flagellar motor switch protein FliG.
   
 
 0.685
C807_00936
Hypothetical protein.
  
  
 0.634
C807_02102
Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
 
  
 0.625
C807_02097
Hypothetical protein; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
       0.620
C807_01121
Hypothetical protein.
    
  0.594
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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