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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C807_02225Hypothetical protein. (268 aa)    
Predicted Functional Partners:
C807_02224
Hypothetical protein.
 
 0.998
C807_02132
Lipopolysaccharide transport system ATP-binding protein.
 
 0.995
C807_02241
Hypothetical protein.
 
  
 0.913
C807_02232
Hypothetical protein.
 
  
 0.828
C807_02226
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.826
C807_02130
Hypothetical protein.
 
  
 0.812
C807_02129
Hypothetical protein.
 
  
 0.804
C807_02121
Hypothetical protein.
 
  
 0.778
C807_02222
Hypothetical protein.
  
  
 0.767
C807_02223
Hypothetical protein.
 
   
 0.761
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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