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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C807_02389Hypothetical protein. (283 aa)    
Predicted Functional Partners:
C807_02390
Hypothetical protein.
     0.938
C807_02744
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
  0.752
C807_01491
Hypothetical protein.
 
     0.737
C807_02927
Hypothetical protein.
 
     0.737
C807_03885
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.736
C807_00540
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.733
C807_02343
comF family protein.
   
    0.457
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.456
C807_00007
Hypothetical protein.
  
     0.445
C807_00065
Hypothetical protein.
  
     0.445
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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