Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rnjRibonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (557 aa)    
Predicted Functional Partners:
C807_02401
Hypothetical protein; Belongs to the Fur family.
       0.819
C807_02402
Hypothetical protein.
       0.792
C807_00864
Hypothetical protein; Belongs to the FPP/GGPP synthase family.
  
    0.783
rny
2',3'-cyclic-nucleotide 2'-phosphodiesterase; Endoribonuclease that initiates mRNA decay.
  
 
 0.773
C807_02404
Hypothetical protein; Belongs to the UPF0297 family.
 
    0.700
C807_02399
Hypothetical protein; Belongs to the UPF0342 family.
       0.697
C807_02403
YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.673
C807_02398
Hypothetical protein.
  
    0.648
C807_02396
Hypothetical protein.
       0.636
C807_02397
Hypothetical protein.
       0.636
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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