Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_02406Hypothetical protein. (76 aa)    
Predicted Functional Partners:
C807_03690
PTS system, Fru family, IIC component.
  
 
 0.974
C807_02095
Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
  
 0.960
C807_00370
PTS system, maltose and glucose-specific subfamily, IIC component.
  
 0.936
C807_00207
PTS system, glucose-like IIB component.
  
 0.918
C807_01432
PTS system, glucose subfamily, IIA component.
  
 0.918
C807_01641
PTS system, beta-glucoside-specific IIABC component.
  
 0.918
C807_02574
PTS system, glucose subfamily, IIA component.
  
 0.918
C807_03422
Hypothetical protein.
   
 0.894
C807_01963
Hypothetical protein.
  
  
  0.880
C807_00797
HPr family phosphocarrier.
     
 0.843
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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