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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C807_02435ABC transporter ATP-binding protein. (287 aa)    
Predicted Functional Partners:
C807_02434
GntR family transcriptional regulator.
 
    0.940
C807_02436
Hypothetical protein.
 
     0.938
C807_01826
Hypothetical protein.
 
    0.783
C807_04056
Hypothetical protein.
 
  0.653
C807_01689
Hypothetical protein.
 
  0.652
C807_03430
Hypothetical protein.
 
  0.651
C807_00019
Hypothetical protein.
 
  0.630
C807_01947
Hypothetical protein.
 
  0.630
C807_00022
DrrB family ABC transporter efflux protein.
  
 
 0.623
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.595
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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