Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_02435ABC transporter ATP-binding protein. (287 aa)    
Predicted Functional Partners:
C807_02436
Hypothetical protein.
 
     0.938
C807_02434
GntR family transcriptional regulator.
 
    0.936
C807_00236
Autotransporter-associated beta strand.
     
  0.810
C807_01826
Hypothetical protein.
 
    0.779
C807_00246
Antibiotic transport system permease.
 
 
 0.752
C807_00022
DrrB family ABC transporter efflux protein.
  
 
 0.721
C807_03504
Hypothetical protein.
  
 
 0.718
C807_03523
Hypothetical protein.
  
 
 0.718
C807_00642
Hypothetical protein.
  
 
 0.665
C807_03731
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
    
 0.616
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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