C807_02439 protein (Lachnospiraceae bacterium 284)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C807_02439

Hypothetical protein. (252 aa)

Predicted Functional Partners:

C807_02438

0.999

C807_00898

0.947

C807_00936

0.890

C807_01908

0.737

C807_03289

0.708

C807_02108

0.704

ecfA

0.680

ecfA-2

0.680

C807_00022

0.587

C807_00246

0.587

Your Current Organism:

Lachnospiraceae bacterium 284

NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C807_00022	C807_00246	C807_00022	C807_00246	DrrB family ABC transporter efflux protein.	Antibiotic transport system permease.	0.799
C807_00022	C807_01908	C807_00022	C807_01908	DrrB family ABC transporter efflux protein.	Hypothetical protein.	0.706
C807_00022	C807_02108	C807_00022	C807_02108	DrrB family ABC transporter efflux protein.	Hypothetical protein.	0.835
C807_00022	C807_02439	C807_00022	C807_02439	DrrB family ABC transporter efflux protein.	Hypothetical protein.	0.587
C807_00022	C807_03289	C807_00022	C807_03289	DrrB family ABC transporter efflux protein.	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.847
C807_00022	ecfA	C807_00022	C807_03821	DrrB family ABC transporter efflux protein.	Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.823
C807_00022	ecfA-2	C807_00022	C807_03822	DrrB family ABC transporter efflux protein.	Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.823
C807_00246	C807_00022	C807_00246	C807_00022	Antibiotic transport system permease.	DrrB family ABC transporter efflux protein.	0.799
C807_00246	C807_01908	C807_00246	C807_01908	Antibiotic transport system permease.	Hypothetical protein.	0.706
C807_00246	C807_02108	C807_00246	C807_02108	Antibiotic transport system permease.	Hypothetical protein.	0.833
C807_00246	C807_02439	C807_00246	C807_02439	Antibiotic transport system permease.	Hypothetical protein.	0.587
C807_00246	C807_03289	C807_00246	C807_03289	Antibiotic transport system permease.	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.839
C807_00246	ecfA	C807_00246	C807_03821	Antibiotic transport system permease.	Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.826
C807_00246	ecfA-2	C807_00246	C807_03822	Antibiotic transport system permease.	Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.826
C807_00898	C807_02438	C807_00898	C807_02438	FeS cluster assembly scaffold protein NifU.	Hypothetical protein.	0.951
C807_00898	C807_02439	C807_00898	C807_02439	FeS cluster assembly scaffold protein NifU.	Hypothetical protein.	0.947
C807_00936	C807_02438	C807_00936	C807_02438	Hypothetical protein.	Hypothetical protein.	0.876
C807_00936	C807_02439	C807_00936	C807_02439	Hypothetical protein.	Hypothetical protein.	0.890
C807_01908	C807_00022	C807_01908	C807_00022	Hypothetical protein.	DrrB family ABC transporter efflux protein.	0.706
C807_01908	C807_00246	C807_01908	C807_00246	Hypothetical protein.	Antibiotic transport system permease.	0.706