Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_02445Hypothetical protein. (288 aa)    
Predicted Functional Partners:
C807_00360
Hypothetical protein.
  
 0.881
C807_02446
Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
       0.757
C807_02447
Hypothetical protein.
       0.757
C807_01783
Hypothetical protein.
  
  
 0.729
C807_00359
Hypothetical protein.
  
 0.708
C807_03742
Electron transfer flavoprotein alpha subunit.
  
  0.700
C807_03092
Exonuclease, DNA polymerase III, epsilon subunit.
    
 0.688
C807_01754
Hypothetical protein.
     
  0.674
C807_03743
Electron transfer flavoprotein beta subunit.
  
 
 0.664
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
     
  0.635
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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