Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_02470Hypothetical protein. (635 aa)    
Predicted Functional Partners:
C807_03422
Hypothetical protein.
 
 
 0.994
C807_03690
PTS system, Fru family, IIC component.
 
 
 0.992
C807_00207
PTS system, glucose-like IIB component.
 
 0.957
C807_01641
PTS system, beta-glucoside-specific IIABC component.
 
 0.952
C807_00370
PTS system, maltose and glucose-specific subfamily, IIC component.
  
 0.946
C807_01432
PTS system, glucose subfamily, IIA component.
  
 0.946
C807_02574
PTS system, glucose subfamily, IIA component.
  
 0.946
C807_02469
PTS system, cellobiose-specific IIB component.
 
  
 0.914
C807_02468
PTS system, lactose/cellobiose family IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
  
 0.906
C807_02467
PTS system, cellobiose-specific IIA component.
 
  
 0.893
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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