Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_02555Hypothetical protein. (400 aa)    
Predicted Functional Partners:
C807_02552
Hypothetical protein.
     0.966
C807_01741
Hypothetical protein.
 
  
 0.804
C807_01657
Hypothetical protein.
 
     0.783
C807_02553
Hypothetical protein.
       0.773
C807_02554
Hypothetical protein.
       0.773
C807_01377
Hypothetical protein.
    
 0.656
C807_03204
N-acetylmuramoyl-L-alanine amidase CwlD.
 
  
 0.512
C807_00491
Hypothetical protein.
     
 0.492
C807_01707
Hypothetical protein.
  
  
 0.466
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.451
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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