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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C807_02632Excisionase family DNA binding domain-containing protein. (67 aa)    
Predicted Functional Partners:
C807_02631
Hypothetical protein; Belongs to the 'phage' integrase family.
 
   
 0.900
C807_00160
Hypothetical protein; Belongs to the 'phage' integrase family.
 
   
 0.792
C807_03756
Hypothetical protein.
 
   
 0.758
C807_02459
Hypothetical protein; Belongs to the 'phage' integrase family.
 
   
 0.697
C807_02463
Hypothetical protein.
 
     0.692
C807_02464
Sigma-70 family RNA polymerase sigma factor.
  
     0.609
C807_00158
Hypothetical protein.
  
     0.582
C807_00157
Sigma-70 family RNA polymerase sigma factor.
  
     0.570
C807_00016
Hypothetical protein.
  
     0.560
C807_02458
Hypothetical protein.
 
   
 0.556
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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