Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_02808Hypothetical protein. (513 aa)    
Predicted Functional Partners:
C807_00983
Hypothetical protein.
  
 
 0.672
C807_01457
Hypothetical protein.
 
 
 
 0.637
C807_00190
Hypothetical protein.
 
 0.602
C807_00791
Hypothetical protein.
  
 
 0.600
C807_01952
Hypothetical protein.
   
   0.593
C807_01923
Hypothetical protein.
   
 
 0.588
C807_02807
Hypothetical protein; Belongs to the 'phage' integrase family.
       0.556
C807_01755
RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
 0.555
C807_02846
Hypothetical protein.
    
  0.549
C807_02738
MazG family protein.
    
  0.545
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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