C807_02875 protein (Lachnospiraceae bacterium 284)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C807_02875

Hypothetical protein. (550 aa)

Predicted Functional Partners:

C807_02871

0.994

fliW

0.994

C807_02870

0.991

C807_02878

0.989

C807_02877

0.988

C807_02876

0.987

C807_03597

0.985

C807_00663

0.979

C807_00653

0.977

C807_02879

0.972

Your Current Organism:

Lachnospiraceae bacterium 284

NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C807_00653	C807_00663	C807_00653	C807_00663	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.	0.998
C807_00653	C807_02870	C807_00653	C807_02870	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar protein FliS.	0.954
C807_00653	C807_02871	C807_00653	C807_02871	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.963
C807_00653	C807_02875	C807_00653	C807_02875	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Hypothetical protein.	0.977
C807_00653	C807_02876	C807_00653	C807_02876	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.	0.971
C807_00653	C807_02877	C807_00653	C807_02877	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar hook-associated protein FlgK.	0.971
C807_00653	C807_02878	C807_00653	C807_02878	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Hypothetical protein.	0.923
C807_00653	C807_02879	C807_00653	C807_02879	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar biosynthesis anti-sigma factor FlgM.	0.935
C807_00653	C807_03597	C807_00653	C807_03597	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar protein FliS.	0.876
C807_00653	fliW	C807_00653	C807_02874	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.	0.704
C807_00663	C807_00653	C807_00663	C807_00653	Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.998
C807_00663	C807_02870	C807_00663	C807_02870	Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar protein FliS.	0.960
C807_00663	C807_02871	C807_00663	C807_02871	Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.	Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.906
C807_00663	C807_02875	C807_00663	C807_02875	Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.	Hypothetical protein.	0.979
C807_00663	C807_02876	C807_00663	C807_02876	Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.	0.959
C807_00663	C807_02877	C807_00663	C807_02877	Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar hook-associated protein FlgK.	0.959
C807_00663	C807_02878	C807_00663	C807_02878	Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.	Hypothetical protein.	0.876
C807_00663	C807_02879	C807_00663	C807_02879	Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar biosynthesis anti-sigma factor FlgM.	0.900
C807_00663	C807_03597	C807_00663	C807_03597	Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar protein FliS.	0.900
C807_00663	fliW	C807_00663	C807_02874	Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.	Hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.	0.899