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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pfkA6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (324 aa)    
Predicted Functional Partners:
C807_03630
Pyruvate kinase; Belongs to the pyruvate kinase family.
 
 
 0.994
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 0.993
C807_03300
Transketolase; Overlaps another CDS with the same product name.
   
  0.953
fbp
Hypothetical protein.
     
 0.952
C807_02484
Fructose-1,6-bisphosphate aldolase, class II.
 
 
 0.943
pfkA-2
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.
  
  
 
0.940
C807_00365
Mannose-6-phosphate isomerase, class I.
    
 0.936
C807_03301
Transketolase; Overlaps another CDS with the same product name.
    
 0.933
C807_00739
Fructose-1,6-bisphosphate aldolase, class II.
  
 
 0.884
C807_01779
Ketose-bisphosphate aldolase.
  
 
 0.884
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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