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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C807_03180Hypothetical protein. (213 aa)    
Predicted Functional Partners:
C807_03170
Hypothetical protein.
 
 0.879
C807_01448
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.836
C807_03740
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.826
C807_01639
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.813
C807_03290
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.811
C807_01443
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.796
C807_02749
C_GCAxxG_C_C family protein.
 
 
 0.784
C807_01040
Hypothetical protein.
  
     0.774
C807_03467
Hypothetical protein.
  
     0.768
C807_00933
Diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.747
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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