Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_03205Hypothetical protein. (580 aa)    
Predicted Functional Partners:
C807_03206
Hypothetical protein.
 
     0.723
C807_01709
Hypothetical protein.
  
     0.697
C807_02733
Hypothetical protein.
  
     0.697
C807_02340
Hypothetical protein.
  
     0.687
C807_01046
Hypothetical protein.
  
   
 0.668
C807_00596
Sodium pump decarboxylase, gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.
  
     0.662
C807_01903
Hypothetical protein.
  
     0.661
C807_03469
Hypothetical protein.
  
     0.657
C807_01069
Hypothetical protein.
  
     0.655
C807_03601
Hypothetical protein.
  
     0.647
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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