Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
C807_03216Pyruvate formate-lyase 1-activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family. (249 aa)    
Predicted Functional Partners:
C807_03213
Formate acetyltransferase.
 
 0.977
C807_03215
Formate acetyltransferase.
 
 
 0.969
C807_00849
Formate acetyltransferase.
 
 
 0.940
C807_00374
PFL2/glycerol dehydratase family glycyl radical enzyme.
 
 
 0.889
C807_00183
NADPH-dependent butanol dehydrogenase.
  
 
 0.693
C807_02185
Hypothetical protein.
  
 
 0.693
C807_02744
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
     
 0.645
C807_02745
Hypothetical protein.
  
  
 0.521
C807_03217
Hypothetical protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
     
 0.505
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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