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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (498 aa)    
Predicted Functional Partners:
C807_03317
L-ribulose-5-phosphate 4-epimerase.
 
 
 0.997
C807_03318
Hypothetical protein.
 
 
 0.964
C807_01129
Hypothetical protein.
 
 
 0.883
C807_00384
L-fuculose-phosphate aldolase.
 
 
 0.804
C807_03690
PTS system, Fru family, IIC component.
   
  
 0.687
C807_00270
Hypothetical protein.
 
     0.627
C807_03310
Hypothetical protein.
 
   
 0.620
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
    
 0.609
xylB
Xylulokinase.
  
 
 0.586
C807_03654
Hypothetical protein.
  
 
 0.586
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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