Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
C807_03337HsdR family type I site-specific deoxyribonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1064 aa)    
Predicted Functional Partners:
C807_03339
Type I restriction enzyme, S subunit.
 
  
 0.977
C807_03340
Hypothetical protein.
 
  
 0.976
C807_03341
Type I restriction-modification system, M subunit.
 
  
 0.975
C807_02165
Hypothetical protein.
 
  
 0.871
C807_03338
Hypothetical protein.
       0.781
C807_02063
Hypothetical protein.
 
  
 0.772
C807_03342
Hypothetical protein.
       0.772
C807_01750
Type I restriction-modification system, M subunit.
 
  
 0.728
C807_03336
Hypothetical protein.
  
    0.681
C807_01749
Hypothetical protein.
 
  
 0.678
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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