Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_03377Hypothetical protein. (192 aa)    
Predicted Functional Partners:
C807_02744
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
 0.964
C807_03376
Flavodoxin.
 
     0.909
C807_03630
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.893
C807_01362
Phosphoribosylformylglycinamidine synthase.
 
  
 0.806
C807_00386
Propionaldehyde dehydrogenase.
  
 
 0.700
C807_02186
Hypothetical protein; Belongs to the aldehyde dehydrogenase family.
  
 
 0.700
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.680
C807_00544
Hypothetical protein.
  
 
 0.678
C807_01810
Chorismate mutase.
     
 0.647
C807_02184
Hypothetical protein.
  
  
 0.640
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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