Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_03379Hypothetical protein. (141 aa)    
Predicted Functional Partners:
C807_03378
Hypothetical protein.
       0.729
C807_03384
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
 
     0.583
C807_03380
Hypothetical protein.
 
     0.525
C807_03393
Hypothetical protein.
 
     0.518
C807_01477
Hypothetical protein.
     0.509
C807_03383
Hypothetical protein.
 
     0.480
C807_01469
4-carboxymuconolactone decarboxylase.
 
     0.435
C807_00242
Hypothetical protein.
  
     0.427
C807_01970
Hypothetical protein.
 
     0.403
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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