Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C807_03389Hypothetical protein. (368 aa)    
Predicted Functional Partners:
C807_02744
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.926
C807_01072
[FeFe] hydrogenase, group B1/B3.
 
 
 0.899
C807_00939
Methionine synthase.
     
  0.808
rnfB
Electron transport complex, rnfabcdge type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
  0.770
C807_01995
Hypothetical protein.
   
 0.766
C807_03390
HAD hydrolase, family IA.
       0.655
C807_03498
Hypothetical protein.
  
 
 0.578
C807_02182
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
     
  0.530
C807_01285
Glutamate synthase (NADPH), homotetrameric.
    
 0.522
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.495
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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