Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_03430Hypothetical protein. (252 aa)    
Predicted Functional Partners:
C807_03432
Hypothetical protein.
 
    0.980
C807_03431
Hypothetical protein.
 
  0.973
C807_03433
Hypothetical protein.
 
     0.846
C807_01825
Hypothetical protein.
 
  0.625
C807_01497
Hypothetical protein.
 
  0.607
C807_02435
ABC transporter ATP-binding protein.
 
  0.585
C807_03420
Hypothetical protein.
  
  0.580
C807_00641
Hypothetical protein.
 
  0.576
C807_03750
Hypothetical protein.
 
  0.569
C807_00023
Antibiotic transport system ATP-binding protein.
  
  0.517
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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