Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C807_00499 | C807_03438 | C807_00499 | C807_03438 | Hypothetical protein. | Hypothetical protein. | 0.444 |
C807_02346 | C807_02347 | C807_02346 | C807_02347 | Flagellar basal-body rod protein FlgG. | Flagellar hook-basal body protein. | 0.998 |
C807_02346 | C807_02744 | C807_02346 | C807_02744 | Flagellar basal-body rod protein FlgG. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.868 |
C807_02346 | C807_03438 | C807_02346 | C807_03438 | Flagellar basal-body rod protein FlgG. | Hypothetical protein. | 0.567 |
C807_02347 | C807_02346 | C807_02347 | C807_02346 | Flagellar hook-basal body protein. | Flagellar basal-body rod protein FlgG. | 0.998 |
C807_02347 | C807_02744 | C807_02347 | C807_02744 | Flagellar hook-basal body protein. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.868 |
C807_02347 | C807_03438 | C807_02347 | C807_03438 | Flagellar hook-basal body protein. | Hypothetical protein. | 0.567 |
C807_02457 | C807_02744 | C807_02457 | C807_02744 | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.812 |
C807_02457 | C807_03438 | C807_02457 | C807_03438 | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Hypothetical protein. | 0.643 |
C807_02744 | C807_02346 | C807_02744 | C807_02346 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Flagellar basal-body rod protein FlgG. | 0.868 |
C807_02744 | C807_02347 | C807_02744 | C807_02347 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Flagellar hook-basal body protein. | 0.868 |
C807_02744 | C807_02457 | C807_02744 | C807_02457 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.812 |
C807_02744 | C807_03438 | C807_02744 | C807_03438 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Hypothetical protein. | 0.766 |
C807_02744 | C807_03891 | C807_02744 | C807_03891 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Hypothetical protein. | 0.812 |
C807_02744 | guaB | C807_02744 | C807_02047 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.922 |
C807_02744 | rpoB | C807_02744 | C807_03918 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.778 |
C807_02744 | secF | C807_02744 | C807_01732 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.475 |
C807_03438 | C807_00499 | C807_03438 | C807_00499 | Hypothetical protein. | Hypothetical protein. | 0.444 |
C807_03438 | C807_02346 | C807_03438 | C807_02346 | Hypothetical protein. | Flagellar basal-body rod protein FlgG. | 0.567 |
C807_03438 | C807_02347 | C807_03438 | C807_02347 | Hypothetical protein. | Flagellar hook-basal body protein. | 0.567 |
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