Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C807_03472Excisionase family DNA binding domain-containing protein. (67 aa)    
Predicted Functional Partners:
C807_03471
Hypothetical protein; Belongs to the 'phage' integrase family.
 
     0.934
C807_02744
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
     
 0.928
C807_02523
Hypothetical protein.
     
  0.887
C807_03690
PTS system, Fru family, IIC component.
     
  0.887
C807_03128
Aconitate hydratase 1.
     
 0.693
C807_03747
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
  0.675
C807_01245
Malate dehydrogenase (oxaloacetate-decarboxylating).
     
 0.646
C807_02918
Hypothetical protein.
    
  0.641
C807_02920
Hypothetical protein.
    
  0.641
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
   
 
 0.640
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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