Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_03483Hypothetical protein. (197 aa)    
Predicted Functional Partners:
C807_02744
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
    
  0.897
C807_03482
Hypothetical protein.
       0.762
C807_02785
Hypothetical protein.
  
     0.755
C807_01810
Chorismate mutase.
    
  0.742
C807_03484
Hypothetical protein.
 
    0.703
C807_01932
Hypothetical protein.
  
     0.664
C807_03485
Hypothetical protein.
  
    0.607
C807_03481
Hypothetical protein.
 
    0.595
C807_02454
Hypothetical protein.
  
     0.559
C807_02182
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
    
 0.550
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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