Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_03485Hypothetical protein. (140 aa)    
Predicted Functional Partners:
C807_03484
Hypothetical protein.
     0.923
C807_02744
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
     
 0.815
C807_03482
Hypothetical protein.
 
     0.651
C807_03483
Hypothetical protein.
  
    0.607
C807_03479
Hypothetical protein.
 
    0.604
C807_03308
Hypothetical protein.
     
  0.581
C807_03481
Hypothetical protein.
 
  
 0.572
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.554
C807_03477
Hypothetical protein.
 
   
 0.552
C807_03630
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.551
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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