Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_03489Multidrug resistance protein. (354 aa)    
Predicted Functional Partners:
C807_01810
Chorismate mutase.
  
 
 0.817
C807_00939
Methionine synthase.
   
 
  0.806
C807_02130
Hypothetical protein.
  
 0.731
C807_01509
Hypothetical protein.
  
 0.716
C807_00810
Hypothetical protein.
  
 0.679
C807_01830
Hypothetical protein.
  
 0.679
C807_03488
Phosphoenolpyruvate synthase.
 
   
 0.673
C807_01623
Hypothetical protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
 
 0.581
C807_00190
Hypothetical protein.
     
 0.572
C807_03487
Hypothetical protein.
     
 0.564
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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