Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_03604Hypothetical protein. (479 aa)    
Predicted Functional Partners:
C807_03602
Hypothetical protein.
 
 
 0.997
C807_03601
Hypothetical protein.
 
 
 0.994
C807_03603
Hypothetical protein.
 
  
  0.993
C807_03607
Hypothetical protein.
 
  
 0.960
C807_03600
Hypothetical protein.
 
  
 0.954
C807_03606
Hypothetical protein.
 
     0.919
C807_03610
Hypothetical protein.
 
  
  0.911
C807_03608
Hypothetical protein.
 
  
 0.860
C807_03605
Hypothetical protein.
 
     0.826
C807_01647
Hypothetical protein.
 
  
  0.802
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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