STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_03633Hypothetical protein. (302 aa)    
Predicted Functional Partners:
rny
2',3'-cyclic-nucleotide 2'-phosphodiesterase; Endoribonuclease that initiates mRNA decay.
 
  
 0.892
C807_03634
tRNA1Val (adenine37-N6)-methyltransferase.
 
    0.882
C807_03631
Hypothetical protein.
  
  
 0.868
C807_03632
DNA polymerase III, subunit gamma and tau.
  
   0.848
rsmI
16S rRNA (-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.835
C807_03629
Hypothetical protein.
  
    0.740
C807_03628
Hypothetical protein.
  
  
 0.667
C807_03630
Pyruvate kinase; Belongs to the pyruvate kinase family.
       0.656
fliE
Flagellar hook-basal body complex protein FliE.
   
   0.648
C807_00663
Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.632
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.