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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C807_03633Hypothetical protein. (302 aa)    
Predicted Functional Partners:
rny
2',3'-cyclic-nucleotide 2'-phosphodiesterase; Endoribonuclease that initiates mRNA decay.
 
  
 0.896
C807_03634
tRNA1Val (adenine37-N6)-methyltransferase.
 
    0.883
C807_03631
Hypothetical protein.
  
  
 0.858
C807_03632
DNA polymerase III, subunit gamma and tau.
  
   0.857
rsmI
16S rRNA (-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.854
C807_03629
Hypothetical protein.
  
    0.751
fliE
Flagellar hook-basal body complex protein FliE.
   
   0.695
C807_00663
Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.681
C807_02345
Hypothetical protein.
    
   0.681
C807_03628
Hypothetical protein.
  
  
 0.662
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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