Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_04028Hypothetical protein. (158 aa)    
Predicted Functional Partners:
C807_04029
Hypothetical protein.
 
    0.923
C807_04015
Hypothetical protein.
 
    0.900
C807_04031
HK97 family phage portal protein.
 
  
 0.875
C807_04035
Hypothetical protein.
 
   
 0.801
C807_04016
Hypothetical protein.
 
     0.737
C807_04033
HK97 family phage major capsid protein.
 
   
 0.665
C807_04030
Hypothetical protein.
       0.601
C807_04034
Hypothetical protein.
 
   
 0.586
C807_04032
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Belongs to the peptidase S14 family.
 
    0.580
C807_04017
Hypothetical protein; Belongs to the N(4)/N(6)-methyltransferase family.
  
 0.555
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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